PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100125760111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 407aa    MW: 46338.8 Da    PI: 9.4398
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100125760111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-16120169155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa a+++a+ k++g
  Ote100125760111|100125760111 120 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAACAYDRAAIKFRG 169
                                   78*******************......55************************997 PP

2AP244.24.7e-14212262155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Ote100125760111|100125760111 212 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 262
                                   89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-7120169IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15120178IPR016177DNA-binding domain
PROSITE profilePS5103217.174121177IPR001471AP2/ERF domain
CDDcd000186.38E-12121176No hitNo description
SMARTSM003801.2E-30121183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-16121177IPR001471AP2/ERF domain
CDDcd000189.41E-24212272No hitNo description
PfamPF008471.0E-9212262IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-17212272IPR016177DNA-binding domain
PROSITE profilePS5103215.461213270IPR001471AP2/ERF domain
SMARTSM003803.5E-31213276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16213271IPR001471AP2/ERF domain
PRINTSPR003673.1E-6214225IPR001471AP2/ERF domain
PRINTSPR003673.1E-6252272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MWDLNXXXXX XXXPRHKRLA SPSDSIDEYA SDEDDAERSG GKKRSSTAFL RPVTRQFFPV  60
DETTETASRG GLPEYPRAHW YGVKFLQSEP HGGGSGNVIF GKAAQQPLKK SRRGPRSRSS  120
QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAACAY DRAAIKFRGV DADINFSLED  180
YEDDLQQMGN LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL  240
GLFDTEIEAA RAYDKAAIKC NGKEAVTNFD ASIYEEELKA AAEPSHRSAD HDLDLSLGNS  300
ASKLRHWRPD GHQIRRHNYN ETETLQLLSH THLNSLKPSN RFGRQLLTPF IASHIYQFAX  360
XXXXXXVHEE QWRMSEGPSF GSAAASSRFH QAQLNWLHRD NGIIRPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099111.11e-143PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotP479271e-118AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLQ84U241e-143Q84U24_ANTMA; LIPLESS1
STRINGVIT_07s0031g00220.t011e-139(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365